Package: vmeasur 0.1.4

vmeasur: Quantify the contractile nature of vessels monitored under an operating microscope

A variety of tools to allow the quantification of videos of the lymphatic vasculature taken under an operating microscope. Lymphatic vessels that have been injected with a variety of blue dyes can be tracked throughout the video to determine their width over time. Code is optimised for efficient processing of multiple large video files. Functions to calculate physiologically relevant parameters and generate graphs from these values are also included.

Authors:James JW Hucklesby [aut, cre], Peter S Russell [aut], Anthony RJ Phillips [aut], Catherine E Angel [aut]

vmeasur_0.1.4.tar.gz
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vmeasur.pdf |vmeasur.html
vmeasur/json (API)

# Install 'vmeasur' in R:
install.packages('vmeasur', repos = c('https://jameshucklesby.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jameshucklesby/vmeasur/issues

Datasets:

On CRAN:

Conda:

2.70 score 140 downloads 10 exports 110 dependencies

Last updated 3 years agofrom:4ece81d4d5. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 28 2025
R-4.5-winOKMar 28 2025
R-4.5-macOKMar 28 2025
R-4.5-linuxOKMar 28 2025
R-4.4-winOKMar 28 2025
R-4.4-macOKMar 28 2025
R-4.4-linuxOKMar 28 2025
R-4.3-winOKMar 28 2025
R-4.3-macOKMar 28 2025

Exports:calibrate_pixel_sizeoutput_dirquantify_directoryquantify_mean_widthquantify_mean_width_sectionsquantify_width_positionscratch_dirselect_roithreshold_applythreshold_vessel

Dependencies:abindaskpassavbackportsbitbit64bmpbootbroomcarcarDataclicliprcodetoolscolorspacecorrplotcowplotcpp11crayoncurlDerivdigestdoBydoFuturedownloaderdplyrfansifarverforeachFormulafuturefuture.applygenericsggplot2ggpubrggrepelggsciggsignifglobalsgluegridExtragtablehmsigraphimagerisobanditeratorsjpeglabelinglatticelifecyclelistenvlme4magrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamodelrmunsellnlmenloptrnnetnumDerivparallellypbkrtestpdftoolspillarpkgconfigpngpolynompracmaprettyunitsprogressprogressrpurrrqpdfquantregR6rbibutilsRColorBrewerRcppRcppEigenRdpackreadbitmapreadrreformulasrlangrstatixrstudioapiscalesSparseMstringistringrsurvivalsvDialogssvGUIsystibbletidyrtidyselecttifftzdbutf8vctrsviridisLitevroomwithr